| Round | Overall | Player |
|---|---|---|
| 1 | 4th | OF Sammy Sosa ChN |
| 2 | 21st | SS Derek Jeter NYA |
| 3 | 28th | OF Bobby Abreu Phi |
| 4 | 45th | 1B Ryan Klesko SD |
| 5 | 52nd | RP Eric Gagne LA |
| 6 | 69th | SP Derek Lowe Bos |
| 7 | 76th | OF Bernie Williams NYA |
| 8 | 93rd | SP Odalis Perez LA |
| 9 | 100th | 2B Junior Spivey Ari |
| 10 | 117th | RP Scott Williamson Bos |
| 11 | 124th | DH Frank Thomas ChA |
| 12 | 141st | SP Jamie Moyer Sea |
| 13 | 148th | 3B Corey Koskie Min |
| 14 | 165th | SP Brian Lawrence SD |
| 15 | 172nd | C Mike Lieberthal Phi |
| 16 | 189th | C Jason Varitek Bos |
| 17 | 196th | OF Randy Winn Sea |
| 18 | 213th | RP Mike DeJean StL |
| 19 | 220th | OF Karim Garcia NYA |
| 20 | 237th | SP Cory Lidle Tor |
| 21 | 244th | SP Mark Redman Fla |
| 22 | 261st | SP Oliver Perez SD |
| 23 | 268th | RP Trevor Hoffman SD |
| 24 | 285th | SP John Burkett Bos |
| 25 | 292nd | 2B Marcus Giles Atl |
| 26 | 309th | 3B Matt Williams Ari |
| 27 | 316th | 1B Doug Mientkiewicz Min |
| 28 | 333rd | SS Jack Wilson Pit |
| 29 | 340th | 1B Lyle Overbay Ari |