| Round | Overall | Player |
|---|---|---|
| 1 | 10th | SS Nomar Garciaparra Bos |
| 2 | 15th | OF Lance Berkman Hou |
| 3 | 34th | 1B Rafael Palmeiro Tex |
| 4 | 39th | OF Luis Gonzalez Ari |
| 5 | 58th | SP Mike Mussina NYA |
| 6 | 63rd | SP Greg Maddux Atl |
| 7 | 82nd | RP Kazuhiro Sasaki Sea |
| 8 | 87th | OF Juan Gonzalez Tex |
| 9 | 106th | SP Randy Wolf Phi |
| 10 | 111th | C Jason Kendall Pit |
| 11 | 130th | 3B Mike Lowell Fla |
| 12 | 135th | OF Raul Ibanez KC |
| 13 | 154th | RP Danys Baez Cle |
| 14 | 159th | DH Josh Phelps Tor |
| 15 | 178th | SP Tony Armas Jr. Mon |
| 16 | 183rd | SP Ben Sheets Mil |
| 17 | 202nd | 2B Todd Walker Bos |
| 18 | 207th | SP Damian Moss Bal |
| 19 | 226th | 1B Sean Casey Cin |
| 20 | 231st | 2B Eric Young SF |
| 21 | 250th | SP Tim Redding Hou |
| 22 | 255th | SP Ryan Dempster Cin |
| 23 | 274th | 3B Jeff Cirillo Sea |
| 24 | 279th | SS Tony Womack ChN |
| 25 | 298th | OF Bob Higginson Det |
| 26 | 303rd | SP Ismael Valdez Tex |
| 27 | 322nd | RP Tim Spooneybarger Fla |
| 28 | 327th | C Ben Davis Sea |
| 29 | 346th | 2B Carlos Febles KC |