| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | OF Barry Bonds SF |
| 2 | 23rd | 3B Eric Chavez Oak |
| 3 | 26th | 1B Carlos Delgado Tor |
| 4 | 47th | OF Andruw Jones Atl |
| 5 | 50th | RP Keith Foulke Oak |
| 6 | 71st | OF Preston Wilson Col |
| 7 | 74th | OF Hideki Matsui NYA |
| 8 | 95th | RP Byung-Hyun Kim Bos |
| 9 | 98th | SP Kerry Wood ChN |
| 10 | 119th | SS Rafael Furcal Atl |
| 11 | 122nd | SP Danny Graves Cin |
| 12 | 143rd | SP Tim Wakefield Bos |
| 13 | 146th | RP Braden Looper Fla |
| 14 | 167th | OF Raul Mondesi Ari |
| 15 | 170th | SP Livan Hernandez Mon |
| 16 | 191st | SP Brett Myers Phi |
| 17 | 194th | 1B Hee Seop Choi ChN |
| 18 | 215th | 2B D'Angelo Jimenez Cin |
| 19 | 218th | SP Kevin Appier KC |
| 20 | 239th | 2B Orlando Hudson Tor |
| 21 | 242nd | RP Anthony Alford ChN |
| 22 | 263rd | C Ramon Hernandez Oak |
| 23 | 266th | SP Jon Garland ChA |
| 24 | 287th | OF Corey Patterson ChN |
| 25 | 290th | 3B David Bell Phi |
| 26 | 311th | C Miguel Olivo ChA |
| 27 | 314th | OF Ben Grieve TB |
| 28 | 335th | SS Desi Relaford KC |
| 29 | 338th | SP Pete Walker Tor |