| Round | Overall | Player |
|---|---|---|
| 1 | 5th | OF Vladimir Guerrero Mon |
| 2 | 20th | OF Magglio Ordonez ChA |
| 3 | 29th | 3B Troy Glaus Ana |
| 4 | 44th | SP Roy Halladay Tor |
| 5 | 53rd | RP Robb Nen SF |
| 6 | 68th | 2B Ray Durham SF |
| 7 | 77th | SP Kevin Millwood Phi |
| 8 | 92nd | 1B Aubrey Huff TB |
| 9 | 101st | OF Jermaine Dye Oak |
| 10 | 116th | SS Jimmy Rollins Phi |
| 11 | 125th | RP Jorge Julio Bal |
| 12 | 140th | SP Ramon Ortiz Ana |
| 13 | 149th | OF Shannon Stewart Min |
| 14 | 164th | SP Jason Schmidt SF |
| 15 | 173rd | 1B Fred McGriff LA |
| 16 | 188th | C Michael Barrett Mon |
| 17 | 197th | SP C.C. Sabathia Cle |
| 18 | 212th | OF Mark Kotsay SD |
| 19 | 221st | SP Kazuhisa Ishii LA |
| 20 | 236th | SP Kip Wells Pit |
| 21 | 245th | 1B Scott Spiezio Ana |
| 22 | 260th | RP Mike MacDougal KC |
| 23 | 269th | SP Orlando Hernandez Mon |
| 24 | 284th | OF Jay Gibbons Bal |
| 25 | 293rd | SP Brandon Duckworth Phi |
| 26 | 308th | 3B Jared Sandberg TB |
| 27 | 317th | C Geronimo Gil Bal |
| 28 | 332nd | 2B Bobby Hill Pit |
| 29 | 341st | SS Royce Clayton Mil |