| Round | Overall | Player |
|---|---|---|
| 1 | 8th | 1B Jason Giambi NYA |
| 2 | 17th | OF Albert Pujols StL |
| 3 | 32nd | OF Pat Burrell Phi |
| 4 | 41st | SP Mark Mulder Oak |
| 5 | 56th | SP Mark Prior ChN |
| 6 | 65th | RP Billy Wagner Hou |
| 7 | 80th | 2B Bret Boone Sea |
| 8 | 89th | OF Torii Hunter Min |
| 9 | 104th | 3B Edgardo Alfonzo SF |
| 10 | 113th | OF Jim Edmonds StL |
| 11 | 128th | SP Josh Beckett Fla |
| 12 | 137th | OF Vernon Wells Tor |
| 13 | 152nd | RP Matt Mantei Ari |
| 14 | 161st | SS Orlando Cabrera Mon |
| 15 | 176th | SP Hideo Nomo LA |
| 16 | 185th | C A.J. Pierzynski Min |
| 17 | 200th | SP Johan Santana Min |
| 18 | 209th | SP Rodrigo Lopez Bal |
| 19 | 224th | 3B Mark Teixeira Tex |
| 20 | 233rd | RP Alan Embree Bos |
| 21 | 248th | RP Scott Stewart Mon |
| 22 | 257th | SP Joe Kennedy TB |
| 23 | 272nd | 2B Mike Young Tex |
| 24 | 281st | SP Casey Fossum Bos |
| 25 | 296th | SS Carlos Guillen Sea |
| 26 | 305th | DH Jeremy Giambi Bos |
| 27 | 320th | SP Runelvys Hernandez KC |
| 28 | 329th | C Ben Molina Ana |
| 29 | 344th | 1B Randall Simon ChN |