| Round | Overall | Player |
|---|---|---|
| 1 | 11th | SP Pedro Martinez Bos |
| 2 | 14th | SS Miguel Tejada Oak |
| 3 | 35th | OF Ichiro Suzuki Sea |
| 4 | 38th | C Jorge Posada NYA |
| 5 | 59th | OF Carlos Beltran KC |
| 6 | 62nd | RP Armando Benitez Sea |
| 7 | 83rd | RP Eddie Guardado Min |
| 8 | 86th | SP Tom Glavine NYN |
| 9 | 107th | 1B Derrek Lee Fla |
| 10 | 110th | RP Jose Mesa Phi |
| 11 | 131st | 3B Shea Hillenbrand Ari |
| 12 | 134th | 1B Mo Vaughn NYN |
| 13 | 155th | 2B Luis Rivas Min |
| 14 | 158th | SP Jose Contreras NYA |
| 15 | 179th | OF Juan Pierre Fla |
| 16 | 182nd | 3B Mark Bellhorn Col |
| 17 | 203rd | OF Roger Cedeno NYN |
| 18 | 206th | C Jason LaRue Cin |
| 19 | 227th | SP Chan Ho Park Tex |
| 20 | 230th | 1B Carlos Pena Det |
| 21 | 251st | SS Alex Gonzalez ChN |
| 22 | 254th | SP Chuck Finley F/A |
| 23 | 275th | 2B Fernando Vina StL |
| 24 | 278th | OF Brian Jordan LA |
| 25 | 299th | OF Reggie Sanders Pit |
| 26 | 302nd | OF Mark McLemore Sea |
| 27 | 323rd | SP Jason Marquis Atl |
| 28 | 326th | DH Brad Fullmer Ana |
| 29 | 347th | SP Glendon Rusch Mil |