| Round | Overall | Player |
|---|---|---|
| 1 | 12th | C Mike Piazza NYN |
| 2 | 13th | 2B Jeff Kent Hou |
| 3 | 36th | RP John Smoltz Atl |
| 4 | 37th | OF Larry Walker Col |
| 5 | 60th | 1B Paul Konerko ChA |
| 6 | 61st | SP Wade Miller Hou |
| 7 | 84th | SP Kevin Brown LA |
| 8 | 85th | RP Mike Williams Phi |
| 9 | 108th | SP Javier Vazquez Mon |
| 10 | 109th | SP Freddy Garcia Sea |
| 11 | 132nd | OF Mike Cameron Sea |
| 12 | 133rd | DH Edgar Martinez Sea |
| 13 | 156th | SS Jose Valentin ChA |
| 14 | 157th | SP David Wells NYA |
| 15 | 180th | 3B Robin Ventura LA |
| 16 | 181st | OF Darin Erstad Ana |
| 17 | 204th | SP Elmer Dessens Ari |
| 18 | 205th | OF Craig Biggio Hou |
| 19 | 228th | SP Ted Lilly Oak |
| 20 | 229th | OF Geoff Jenkins Mil |
| 21 | 252nd | 3B Brandon Larson Cin |
| 22 | 253rd | SP Pedro Astacio NYN |
| 23 | 276th | 2B Brent Butler Col |
| 24 | 277th | SP Darren Dreifort LA |
| 25 | 300th | OF Kenny Lofton ChN |
| 26 | 301st | SS Barry Larkin Cin |
| 27 | 324th | 1B Jeff Conine Bal |
| 28 | 325th | C Sandy Alomar Jr. ChA |
| 29 | 348th | 3B Xavier Nady SD |