| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Tex |
| 2 | 24th | 1B Jeff Bagwell Hou |
| 3 | 25th | OF Brian S. Giles Pit |
| 4 | 48th | SP Greg Maddux Atl |
| 5 | 49th | SP Matt Morris StL |
| 6 | 72nd | 2B Bret Boone Sea |
| 7 | 73rd | OF Garret Anderson Ana |
| 8 | 96th | RP Matt Mantei Ari |
| 9 | 97th | OF Jim Edmonds StL |
| 10 | 120th | RP Jason Isringhausen StL |
| 11 | 121st | 3B Corey Koskie Min |
| 12 | 144th | SP Al Leiter NYN |
| 13 | 145th | SP Woody Williams StL |
| 14 | 168th | OF Mike Cameron Sea |
| 15 | 169th | RP Mike DeJean StL |
| 16 | 192nd | C Jason Varitek Bos |
| 17 | 193rd | SP Kirk Rueter SF |
| 18 | 216th | 1B Sean Casey Cin |
| 19 | 217th | OF Juan Encarnacion Fla |
| 20 | 240th | 3B Brandon Larson Cin |
| 21 | 241st | C A.J. Pierzynski Min |
| 22 | 264th | SP Kenny Rogers Min |
| 23 | 265th | SP Jon Garland ChA |
| 24 | 288th | OF Mark Kotsay SD |
| 25 | 289th | 2B Placido Polanco Phi |
| 26 | 312th | RP Steve Kline StL |
| 27 | 313th | SP Ismael Valdez Tex |
| 28 | 336th | SP Shane Reynolds Atl |
| 29 | 337th | SS Jack Wilson Pit |