| Round | Overall | Player |
|---|---|---|
| 1 | 10th | SS Miguel Tejada Oak |
| 2 | 15th | OF Shawn Green LA |
| 3 | 34th | SP Mark Mulder Oak |
| 4 | 39th | 1B Rafael Palmeiro Tex |
| 5 | 58th | SP Derek Lowe Bos |
| 6 | 63rd | RP Billy Wagner Hou |
| 7 | 82nd | 3B Eric Hinske Tor |
| 8 | 87th | 1B Richie Sexson Mil |
| 9 | 106th | OF Vernon Wells Tor |
| 10 | 111th | RP Braden Looper Fla |
| 11 | 130th | SP Paul Byrd Atl |
| 12 | 135th | SP Russ Ortiz Atl |
| 13 | 154th | SP David Wells NYA |
| 14 | 159th | C Benito Santiago SF |
| 15 | 178th | OF Karim Garcia NYA |
| 16 | 183rd | SP Jason Jennings Col |
| 17 | 202nd | 2B Brandon Phillips Cle |
| 18 | 207th | SP Oliver Perez SD |
| 19 | 226th | SS Chris Woodward Tor |
| 20 | 231st | C Miguel Olivo ChA |
| 21 | 250th | OF Brian Jordan LA |
| 22 | 255th | 1B Lyle Overbay Ari |
| 23 | 274th | 2B Joe Thurston LA |
| 24 | 279th | OF Reggie Sanders Pit |
| 25 | 298th | RP Franklyn German Det |
| 26 | 303rd | 3B Vinny Castilla Atl |
| 27 | 322nd | SP Omar Daal Bal |
| 28 | 327th | SP Denny Neagle Col |
| 29 | 346th | 2B Bobby Hill Pit |