| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | OF Sammy Sosa ChN |
| 2 | 23rd | SP Barry Zito Oak |
| 3 | 26th | 3B Scott Rolen StL |
| 4 | 47th | OF Andruw Jones Atl |
| 5 | 50th | RP Robb Nen SF |
| 6 | 71st | 1B Ryan Klesko SD |
| 7 | 74th | SP Kevin Millwood Phi |
| 8 | 95th | OF Cliff Floyd NYN |
| 9 | 98th | SS Jimmy Rollins Phi |
| 10 | 119th | RP Jose Jimenez Col |
| 11 | 122nd | C Paul Lo Duca LA |
| 12 | 143rd | SP Joel Pineiro Sea |
| 13 | 146th | SP Rodrigo Lopez Bal |
| 14 | 167th | 2B Luis Castillo Fla |
| 15 | 170th | OF Darin Erstad Ana |
| 16 | 191st | SP Kevin Appier KC |
| 17 | 194th | SP Cory Lidle Tor |
| 18 | 215th | SS Omar Vizquel Cle |
| 19 | 218th | 2B Luis Rivas Min |
| 20 | 239th | OF Randy Winn Sea |
| 21 | 242nd | C Brad Ausmus Hou |
| 22 | 263rd | SP Ted Lilly Oak |
| 23 | 266th | 1B David Ortiz Bos |
| 24 | 287th | OF Eli Marrero StL |
| 25 | 290th | SP Brandon Duckworth Phi |
| 26 | 311th | 3B Wes Helms Mil |
| 27 | 314th | SP Joe Kennedy TB |
| 28 | 335th | DH Jeremy Giambi Bos |
| 29 | 338th | SP Runelvys Hernandez KC |