| Round | Overall | Player |
|---|---|---|
| 1 | 11th | 1B Todd Helton Col |
| 2 | 14th | SS Nomar Garciaparra Bos |
| 3 | 35th | SP Roy Oswalt Hou |
| 4 | 38th | SP Roy Halladay Tor |
| 5 | 59th | OF Adam Dunn Cin |
| 6 | 62nd | SP Wade Miller Hou |
| 7 | 83rd | OF Torii Hunter Min |
| 8 | 86th | 2B Aaron Boone NYA |
| 9 | 107th | SP Javier Vazquez Mon |
| 10 | 110th | 3B Edgardo Alfonzo SF |
| 11 | 131st | SP Josh Beckett Fla |
| 12 | 134th | SP Matt Clement ChN |
| 13 | 155th | SP Vicente Padilla Phi |
| 14 | 158th | OF Shannon Stewart Min |
| 15 | 179th | OF Moises Alou ChN |
| 16 | 182nd | OF Raul Mondesi Ari |
| 17 | 203rd | 3B David Bell Phi |
| 18 | 206th | C Javy Lopez Atl |
| 19 | 227th | OF Richard Hidalgo Hou |
| 20 | 230th | C Damian Miller ChN |
| 21 | 251st | SP Brett Myers Phi |
| 22 | 254th | 1B Robert Fick Atl |
| 23 | 275th | 2B Fernando Vina StL |
| 24 | 278th | SP Darren Dreifort LA |
| 25 | 299th | SP Rafael Soriano Sea |
| 26 | 302nd | SS Barry Larkin Cin |
| 27 | 323rd | SP Tim Redding Hou |
| 28 | 326th | OF Michael Cuddyer Min |
| 29 | 347th | SP Casey Fossum Bos |