| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | OF Barry Bonds SF |
| 2 | 22nd | OF Magglio Ordonez ChA |
| 3 | 27th | 3B Troy Glaus Ana |
| 4 | 46th | RP John Smoltz Atl |
| 5 | 51st | RP Eric Gagne LA |
| 6 | 70th | SP Jarrod Washburn Ana |
| 7 | 75th | RP Kelvim Escobar Tor |
| 8 | 94th | SP Randy Wolf Phi |
| 9 | 99th | SS Rich Aurilia SF |
| 10 | 118th | DH Erubiel Durazo Oak |
| 11 | 123rd | C Charles Johnson Col |
| 12 | 142nd | OF Carlos Lee ChA |
| 13 | 147th | 2B Todd Walker Bos |
| 14 | 166th | OF Jose Cruz Jr SF |
| 15 | 171st | SP Brad Radke Min |
| 16 | 190th | 1B Carlos Pena Det |
| 17 | 195th | SS David Eckstein Ana |
| 18 | 214th | 3B Joe Randa KC |
| 19 | 219th | SP Danny Wright ChA |
| 20 | 238th | C Jason LaRue Cin |
| 21 | 243rd | 1B Tino Martinez StL |
| 22 | 262nd | 2B Mike Young Tex |
| 23 | 267th | SP Adam Eaton SD |
| 24 | 286th | SP Jimmy Haynes Cin |
| 25 | 291st | OF Brad Wilkerson Mon |
| 26 | 310th | DH Nick Johnson NYA |
| 27 | 315th | OF Matt Lawton Cle |
| 28 | 334th | SP Chris Reitsma Cin |
| 29 | 339th | SP Kurt Ainsworth Bal |