| Round | Overall | Player |
|---|---|---|
| 1 | 6th | SP Randy Johnson Ari |
| 2 | 19th | OF Albert Pujols StL |
| 3 | 30th | OF Pat Burrell Phi |
| 4 | 43rd | SP Tim Hudson Oak |
| 5 | 54th | 1B Paul Konerko ChA |
| 6 | 67th | 3B Aramis Ramirez ChN |
| 7 | 78th | 2B Roberto Alomar ChA |
| 8 | 91st | RP Kazuhiro Sasaki Sea |
| 9 | 102nd | SP Jason Schmidt SF |
| 10 | 115th | DH Frank Thomas ChA |
| 11 | 126th | RP Danys Baez Cle |
| 12 | 139th | 3B Jose Hernandez Pit |
| 13 | 150th | SP Jeff Weaver NYA |
| 14 | 163rd | C Toby Hall TB |
| 15 | 174th | SS Cristian Guzman Min |
| 16 | 187th | SP Brad Penny Fla |
| 17 | 198th | OF Geoff Jenkins Mil |
| 18 | 211th | 3B Hank Blalock Tex |
| 19 | 222nd | OF Jay Gibbons Bal |
| 20 | 235th | SP Damian Moss Bal |
| 21 | 246th | C Ben Davis Sea |
| 22 | 259th | OF Jay Payton Col |
| 23 | 270th | SP Jose Contreras NYA |
| 24 | 283rd | OF Jeromy Burnitz LA |
| 25 | 294th | SP Josh Fogg Pit |
| 26 | 307th | RP Brandon Villafuerte SD |
| 27 | 318th | 1B Doug Mientkiewicz Min |
| 28 | 331st | OF Danny Bautista Ari |
| 29 | 342nd | 2B Ron Belliard Col |