| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Tex |
| 2 | 24th | C Ivan Rodriguez Fla |
| 3 | 25th | 1B Jeff Bagwell Hou |
| 4 | 48th | OF Ken Griffey Jr Cin |
| 5 | 49th | OF Adam Dunn Cin |
| 6 | 72nd | OF Jim Edmonds StL |
| 7 | 73rd | SP Kerry Wood ChN |
| 8 | 96th | 3B Edgardo Alfonzo SF |
| 9 | 97th | RP Ugueth Urbina Fla |
| 10 | 120th | SP Jason Schmidt SF |
| 11 | 121st | SP Al Leiter NYN |
| 12 | 144th | 2B Todd Walker Bos |
| 13 | 145th | SP Woody Williams StL |
| 14 | 168th | RP Braden Looper Fla |
| 15 | 169th | DH Ellis Burks Cle |
| 16 | 192nd | 1B Scott Spiezio Ana |
| 17 | 193rd | SP Damian Moss Bal |
| 18 | 216th | OF Jay Payton Col |
| 19 | 217th | SP Tim Wakefield Bos |
| 20 | 240th | SP Oliver Perez SD |
| 21 | 241st | SP Carlos Zambrano ChN |
| 22 | 264th | 3B Matt Williams Ari |
| 23 | 265th | SP Victor Zambrano TB |
| 24 | 288th | SS Barry Larkin Cin |
| 25 | 289th | SP Carl Pavano Fla |
| 26 | 312th | 2B Luis Rivas Min |
| 27 | 313th | DH Eric Munson Det |
| 28 | 336th | OF Bubba Trammell NYA |
| 29 | 337th | C Einar Diaz Tex |