| Round | Overall | Player |
|---|---|---|
| 1 | 5th | OF Vladimir Guerrero Mon |
| 2 | 20th | 2B Jeff Kent Hou |
| 3 | 29th | 1B Carlos Delgado Tor |
| 4 | 44th | C Jorge Posada NYA |
| 5 | 53rd | OF Luis Gonzalez Ari |
| 6 | 68th | OF Garret Anderson Ana |
| 7 | 77th | OF Preston Wilson Col |
| 8 | 92nd | SS Rich Aurilia SF |
| 9 | 101st | 3B Jose Hernandez Pit |
| 10 | 116th | SP Roger Clemens NYA |
| 11 | 125th | RP Scott Williamson Bos |
| 12 | 140th | SP Brad Radke Min |
| 13 | 149th | SP Vicente Padilla Phi |
| 14 | 164th | DH Josh Phelps Tor |
| 15 | 173rd | RP Danys Baez Cle |
| 16 | 188th | SP Ted Lilly Oak |
| 17 | 197th | SP Tony Armas Jr. Mon |
| 18 | 212th | SP Brett Tomko StL |
| 19 | 221st | SP Darren Dreifort LA |
| 20 | 236th | SP Chan Ho Park Tex |
| 21 | 245th | SP Kurt Ainsworth Bal |
| 22 | 260th | 3B Brandon Larson Cin |
| 23 | 269th | OF Trot Nixon Bos |
| 24 | 284th | OF Dmitri Young Det |
| 25 | 293rd | 1B Travis Lee TB |
| 26 | 308th | C Bobby Estalella Col |
| 27 | 317th | SP Horacio Ramirez Atl |
| 28 | 332nd | 2B Mark Grudzielanek ChN |
| 29 | 341st | SS Rey Sanchez Sea |