| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | 2B Alfonso Soriano NYA |
| 2 | 22nd | SP Barry Zito Oak |
| 3 | 27th | SS Derek Jeter NYA |
| 4 | 46th | SP Roy Halladay Tor |
| 5 | 51st | SP Mark Buehrle ChA |
| 6 | 70th | OF Juan Gonzalez Tex |
| 7 | 75th | SP Kevin Brown LA |
| 8 | 94th | RP Eddie Guardado Min |
| 9 | 99th | OF Hideki Matsui NYA |
| 10 | 118th | SP Josh Beckett Fla |
| 11 | 123rd | RP Mike Williams Phi |
| 12 | 142nd | OF Raul Ibanez KC |
| 13 | 147th | 3B Joe Crede ChA |
| 14 | 166th | C Jason Varitek Bos |
| 15 | 171st | OF Tim Salmon Ana |
| 16 | 190th | 1B Carlos Pena Det |
| 17 | 195th | 1B Travis Hafner Cle |
| 18 | 214th | SP Danny Graves Cin |
| 19 | 219th | C Javy Lopez Atl |
| 20 | 238th | OF Bob Higginson Det |
| 21 | 243rd | 1B Hee Seop Choi ChN |
| 22 | 262nd | RP Trevor Hoffman SD |
| 23 | 267th | SP Brandon Duckworth Phi |
| 24 | 286th | 3B Chris Stynes Col |
| 25 | 291st | 2B Eric Young SF |
| 26 | 310th | RP Anthony Alford ChN |
| 27 | 315th | OF Kenny Lofton ChN |
| 28 | 334th | 3B Casey Blake Cle |
| 29 | 339th | SS Angel Berroa KC |