| Round | Overall | Player |
|---|---|---|
| 1 | 9th | 1B Jason Giambi NYA |
| 2 | 16th | C Mike Piazza NYN |
| 3 | 33rd | 3B Troy Glaus Ana |
| 4 | 40th | OF Chipper Jones Atl |
| 5 | 57th | SP Greg Maddux Atl |
| 6 | 64th | RP Keith Foulke Oak |
| 7 | 81st | SP Javier Vazquez Mon |
| 8 | 88th | RP Mariano Rivera NYA |
| 9 | 105th | SP Jarrod Washburn Ana |
| 10 | 112th | SP Jeff Weaver NYA |
| 11 | 129th | SS Edgar Renteria StL |
| 12 | 136th | DH Edgar Martinez Sea |
| 13 | 153rd | OF Jermaine Dye Oak |
| 14 | 160th | OF Vernon Wells Tor |
| 15 | 177th | OF Raul Mondesi Ari |
| 16 | 184th | OF Karim Garcia NYA |
| 17 | 201st | RP Mike DeJean StL |
| 18 | 208th | SS Cristian Guzman Min |
| 19 | 225th | 3B Robin Ventura LA |
| 20 | 232nd | SP Joe Mays Min |
| 21 | 249th | 2B Marcus Giles Atl |
| 22 | 256th | RP Brandon Villafuerte SD |
| 23 | 273rd | SP Mark Redman Fla |
| 24 | 280th | 2B Orlando Hudson Tor |
| 25 | 297th | C Ben Davis Sea |
| 26 | 304th | RP Dave Veres ChN |
| 27 | 321st | 1B Jeff Conine Bal |
| 28 | 328th | SP John Burkett Bos |
| 29 | 345th | OF Frank Catalanotto Tor |