| Round | Overall | Player |
|---|---|---|
| 1 | 12th | SS Nomar Garciaparra Bos |
| 2 | 13th | SP Pedro Martinez Bos |
| 3 | 36th | SP Roy Oswalt Hou |
| 4 | 37th | OF Gary Sheffield Atl |
| 5 | 60th | 2B Jose Vidro Mon |
| 6 | 61st | 1B Paul Konerko ChA |
| 7 | 84th | 3B Mike Lowell Fla |
| 8 | 85th | SP Freddy Garcia Sea |
| 9 | 108th | C Paul Lo Duca LA |
| 10 | 109th | OF Shannon Stewart Min |
| 11 | 132nd | RP Jason Isringhausen StL |
| 12 | 133rd | OF Moises Alou ChN |
| 13 | 156th | OF Mike Cameron Sea |
| 14 | 157th | 1B Fred McGriff LA |
| 15 | 180th | SP Brett Myers Phi |
| 16 | 181st | C A.J. Pierzynski Min |
| 17 | 204th | SS Alex Gonzalez ChN |
| 18 | 205th | 3B Shea Hillenbrand Ari |
| 19 | 228th | OF Jay Gibbons Bal |
| 20 | 229th | SP Jon Garland ChA |
| 21 | 252nd | SP Johan Santana Min |
| 22 | 253rd | 2B D'Angelo Jimenez Cin |
| 23 | 276th | RP Matt Anderson Det |
| 24 | 277th | SP Todd Ritchie Mil |
| 25 | 300th | SP Esteban Loaiza ChA |
| 26 | 301st | SP Omar Daal Bal |
| 27 | 324th | SS Ramon Santiago Det |
| 28 | 325th | 3B Fernando Tatis Mon |
| 29 | 348th | 1B Randall Simon ChN |