| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Tex |
| 2 | 24th | SP Roy Oswalt Hou |
| 3 | 25th | OF Brian S. Giles Pit |
| 4 | 48th | 1B Richie Sexson Mil |
| 5 | 49th | SP Roy Halladay Tor |
| 6 | 72nd | RP Troy Percival Ana |
| 7 | 73rd | OF Garret Anderson Ana |
| 8 | 96th | SP Freddy Garcia Sea |
| 9 | 97th | C Paul Lo Duca LA |
| 10 | 120th | OF Jacque Jones Min |
| 11 | 121st | SP A.J. Burnett Fla |
| 12 | 144th | 3B Jose Hernandez Pit |
| 13 | 145th | 3B Mark Bellhorn Col |
| 14 | 168th | RP Jose Jimenez Col |
| 15 | 169th | DH Edgar Martinez Sea |
| 16 | 192nd | DH Jeremy Giambi Bos |
| 17 | 193rd | SP Paul Byrd Atl |
| 18 | 216th | SP Elmer Dessens Ari |
| 19 | 217th | OF Carl Everett ChA |
| 20 | 240th | 3B Jeff Cirillo Sea |
| 21 | 241st | SP Pedro Astacio NYN |
| 22 | 264th | 2B Eric Young SF |
| 23 | 265th | RP Matt Anderson Det |
| 24 | 288th | SP Carlos Zambrano ChN |
| 25 | 289th | OF Bob Higginson Det |
| 26 | 312th | SP Jason Marquis Atl |
| 27 | 313th | OF Rondell White SD |
| 28 | 336th | 1B Scott Hatteberg Oak |
| 29 | 337th | RP Franklyn German Det |