| Round | Overall | Player |
|---|---|---|
| 1 | 4th | 2B Alfonso Soriano NYA |
| 2 | 21st | 2B Jeff Kent Hou |
| 3 | 28th | RP John Smoltz Atl |
| 4 | 45th | RP Robb Nen SF |
| 5 | 52nd | SS Edgar Renteria StL |
| 6 | 69th | OF Bernie Williams NYA |
| 7 | 76th | OF Preston Wilson Col |
| 8 | 93rd | SP Jason Schmidt SF |
| 9 | 100th | OF Austin Kearns Cin |
| 10 | 117th | 1B Derrek Lee Fla |
| 11 | 124th | 3B Joe Crede ChA |
| 12 | 141st | RP Jorge Julio Bal |
| 13 | 148th | C Toby Hall TB |
| 14 | 165th | OF Mike Cameron Sea |
| 15 | 172nd | SP C.C. Sabathia Cle |
| 16 | 189th | SP Johan Santana Min |
| 17 | 196th | SP Mike Hampton Atl |
| 18 | 213th | SP Tomo Ohka Mon |
| 19 | 220th | SP Ted Lilly Oak |
| 20 | 237th | SP Brad Penny Fla |
| 21 | 244th | OF Frank Catalanotto Tor |
| 22 | 261st | 1B Robert Fick Atl |
| 23 | 268th | 2B Brandon Phillips Cle |
| 24 | 285th | C Miguel Olivo ChA |
| 25 | 292nd | OF Reggie Sanders Pit |
| 26 | 309th | SP Shane Reynolds Atl |
| 27 | 316th | 3B Vinny Castilla Atl |
| 28 | 333rd | OF Marlon Byrd Phi |
| 29 | 340th | SS Andy Fox Fla |