| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | OF Barry Bonds SF |
| 2 | 23rd | 3B Troy Glaus Ana |
| 3 | 26th | 1B Carlos Delgado Tor |
| 4 | 47th | SP Mark Mulder Oak |
| 5 | 50th | C Ivan Rodriguez Fla |
| 6 | 71st | SS Jimmy Rollins Phi |
| 7 | 74th | RP Kazuhiro Sasaki Sea |
| 8 | 95th | SP Jarrod Washburn Ana |
| 9 | 98th | OF Hideki Matsui NYA |
| 10 | 119th | SP Jamie Moyer Sea |
| 11 | 122nd | SP Josh Beckett Fla |
| 12 | 143rd | OF Carlos Lee ChA |
| 13 | 146th | SP Brad Radke Min |
| 14 | 167th | OF Tim Salmon Ana |
| 15 | 170th | 2B Fernando Vina StL |
| 16 | 191st | OF Jay Payton Col |
| 17 | 194th | SP Orlando Hernandez Mon |
| 18 | 215th | SP Ryan Dempster Cin |
| 19 | 218th | 2B Mark Ellis Oak |
| 20 | 239th | 3B Joe Randa KC |
| 21 | 242nd | DH Ellis Burks Cle |
| 22 | 263rd | OF Richard Hidalgo Hou |
| 23 | 266th | 1B Doug Mientkiewicz Min |
| 24 | 287th | SP Joe Kennedy TB |
| 25 | 290th | SS Carlos Guillen Sea |
| 26 | 311th | OF Gary Matthews Jr. SD |
| 27 | 314th | SP John Patterson Ari |
| 28 | 335th | SP John Halama Oak |
| 29 | 338th | 3B Wes Helms Mil |