| Round | Overall | Player |
|---|---|---|
| 1 | 8th | SP Pedro Martinez Bos |
| 2 | 17th | OF Lance Berkman Hou |
| 3 | 32nd | RP Eric Gagne LA |
| 4 | 41st | SP Derek Lowe Bos |
| 5 | 56th | OF Luis Gonzalez Ari |
| 6 | 65th | SP Bartolo Colon ChA |
| 7 | 80th | 1B Ryan Klesko SD |
| 8 | 89th | RP Billy Koch ChA |
| 9 | 104th | 3B Mike Lowell Fla |
| 10 | 113th | 2B Todd Walker Bos |
| 11 | 128th | DH Frank Thomas ChA |
| 12 | 137th | SS Orlando Cabrera Mon |
| 13 | 152nd | C Mike Lieberthal Phi |
| 14 | 161st | SP Tony Armas Jr. Mon |
| 15 | 176th | OF Jose Cruz Jr SF |
| 16 | 185th | SP Brian Lawrence SD |
| 17 | 200th | SP Kip Wells Pit |
| 18 | 209th | OF Raul Mondesi Ari |
| 19 | 224th | C Michael Barrett Mon |
| 20 | 233rd | 3B Robin Ventura LA |
| 21 | 248th | OF Brad Wilkerson Mon |
| 22 | 257th | SS Barry Larkin Cin |
| 23 | 272nd | 1B Travis Hafner Cle |
| 24 | 281st | RP Braden Looper Fla |
| 25 | 296th | SP Jimmy Haynes Cin |
| 26 | 305th | 2B Marcus Giles Atl |
| 27 | 320th | SP Glendon Rusch Mil |
| 28 | 329th | OF Gabe Kapler Bos |
| 29 | 344th | 1B Eric Karros ChN |