| Round | Overall | Player |
|---|---|---|
| 1 | 11th | SP Barry Zito Oak |
| 2 | 14th | C Mike Piazza NYN |
| 3 | 35th | OF Ichiro Suzuki Sea |
| 4 | 38th | 1B Mike Sweeney KC |
| 5 | 59th | 2B Aaron Boone NYA |
| 6 | 62nd | 3B Corey Koskie Min |
| 7 | 83rd | OF Andruw Jones Atl |
| 8 | 86th | RP Eddie Guardado Min |
| 9 | 107th | SP Tom Glavine NYN |
| 10 | 110th | OF Johnny Damon Bos |
| 11 | 131st | SP Al Leiter NYN |
| 12 | 134th | SS David Eckstein Ana |
| 13 | 155th | RP Ugueth Urbina Fla |
| 14 | 158th | RP Danys Baez Cle |
| 15 | 179th | OF Juan Pierre Fla |
| 16 | 182nd | 1B Tino Martinez StL |
| 17 | 203rd | SP Ismael Valdez Tex |
| 18 | 206th | SP Kyle Lohse Min |
| 19 | 227th | C Jason LaRue Cin |
| 20 | 230th | 3B Mark Teixeira Tex |
| 21 | 251st | SS Tony Womack ChN |
| 22 | 254th | SP Josh Fogg Pit |
| 23 | 275th | 2B Pokey Reese Pit |
| 24 | 278th | RP Anthony Alford ChN |
| 25 | 299th | OF Michael Cuddyer Min |
| 26 | 302nd | 1B Randall Simon ChN |
| 27 | 323rd | SP Jason Jennings Col |
| 28 | 326th | 2B Jerry Hairston Jr. Bal |
| 29 | 347th | OF David Roberts LA |