| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | SP Randy Johnson Ari |
| 2 | 22nd | 3B Eric Chavez Oak |
| 3 | 27th | 1B Jeff Bagwell Hou |
| 4 | 46th | OF Pat Burrell Phi |
| 5 | 51st | SP Greg Maddux Atl |
| 6 | 70th | 2B Bret Boone Sea |
| 7 | 75th | OF Adam Dunn Cin |
| 8 | 94th | RP Jose Mesa Phi |
| 9 | 99th | SP Kevin Brown LA |
| 10 | 118th | SP Joel Pineiro Sea |
| 11 | 123rd | OF Jermaine Dye Oak |
| 12 | 142nd | SS Omar Vizquel Cle |
| 13 | 147th | SP Danny Graves Cin |
| 14 | 166th | OF Randy Winn Sea |
| 15 | 171st | SP Rodrigo Lopez Bal |
| 16 | 190th | 3B Shea Hillenbrand Ari |
| 17 | 195th | C Damian Miller ChN |
| 18 | 214th | C Javy Lopez Atl |
| 19 | 219th | OF Karim Garcia NYA |
| 20 | 238th | 1B Sean Casey Cin |
| 21 | 243rd | SS Chris Woodward Tor |
| 22 | 262nd | SP Jake Peavy SD |
| 23 | 267th | OF Brian Jordan LA |
| 24 | 286th | 2B Placido Polanco Phi |
| 25 | 291st | SP Mark Redman Fla |
| 26 | 310th | SP Shawn Estes ChN |
| 27 | 315th | SP Casey Fossum Bos |
| 28 | 334th | RP Dave Veres ChN |
| 29 | 339th | 3B Craig Counsell Ari |