| Round | Overall | Player |
|---|---|---|
| 1 | 6th | 1B Jason Giambi NYA |
| 2 | 19th | OF Albert Pujols StL |
| 3 | 30th | SP Matt Morris StL |
| 4 | 43rd | RP Mariano Rivera NYA |
| 5 | 54th | C Jorge Posada NYA |
| 6 | 67th | SP Javier Vazquez Mon |
| 7 | 78th | OF Ken Griffey Jr Cin |
| 8 | 91st | OF Juan Gonzalez Tex |
| 9 | 102nd | SP Roger Clemens NYA |
| 10 | 115th | 3B Aramis Ramirez ChN |
| 11 | 126th | 2B Junior Spivey Ari |
| 12 | 139th | SP Vicente Padilla Phi |
| 13 | 150th | RP Byung-Hyun Kim Bos |
| 14 | 163rd | SP David Wells NYA |
| 15 | 174th | SS Jose Valentin ChA |
| 16 | 187th | OF Geoff Jenkins Mil |
| 17 | 198th | SP Joe Mays Min |
| 18 | 211th | OF Jeromy Burnitz LA |
| 19 | 222nd | SP Tim Wakefield Bos |
| 20 | 235th | SP Kazuhisa Ishii LA |
| 21 | 246th | OF Danny Bautista Ari |
| 22 | 259th | OF Kevin Millar Bos |
| 23 | 270th | 2B Brent Butler Col |
| 24 | 283rd | 1B David Ortiz Bos |
| 25 | 294th | 3B Fernando Tatis Mon |
| 26 | 307th | C Victor Martinez Cle |
| 27 | 318th | SP Gil Meche Sea |
| 28 | 331st | OF Kevin Mench Tex |
| 29 | 342nd | RP Brandon Villafuerte SD |