| Round | Overall | Player |
|---|---|---|
| 1 | 9th | SP Curt Schilling Ari |
| 2 | 16th | SS Derek Jeter NYA |
| 3 | 33rd | 1B Rafael Palmeiro Tex |
| 4 | 40th | OF Larry Walker Col |
| 5 | 57th | 3B Eric Hinske Tor |
| 6 | 64th | SP Mark Prior ChN |
| 7 | 81st | OF Torii Hunter Min |
| 8 | 88th | RP Billy Wagner Hou |
| 9 | 105th | SP Odalis Perez LA |
| 10 | 112th | OF Jim Edmonds StL |
| 11 | 129th | 2B Luis Castillo Fla |
| 12 | 136th | RP Mike Williams Phi |
| 13 | 153rd | C Benito Santiago SF |
| 14 | 160th | 1B Mo Vaughn NYN |
| 15 | 177th | OF Steve Finley Ari |
| 16 | 184th | 1B Fred McGriff LA |
| 17 | 201st | 3B Tony Batista Bal |
| 18 | 208th | C A.J. Pierzynski Min |
| 19 | 225th | SP Kevin Appier KC |
| 20 | 232nd | SP Kenny Rogers Min |
| 21 | 249th | SP Livan Hernandez Mon |
| 22 | 256th | OF Mark Kotsay SD |
| 23 | 273rd | 2B Joe Thurston LA |
| 24 | 280th | RP Mike DeJean StL |
| 25 | 297th | SS Julio Lugo TB |
| 26 | 304th | SP Brett Myers Phi |
| 27 | 321st | SP Sidney Ponson SF |
| 28 | 328th | SP Andy Ashby LA |
| 29 | 345th | SP John Thomson Tex |