| Round | Overall | Player |
|---|---|---|
| 1 | 12th | SS Miguel Tejada Oak |
| 2 | 13th | OF Magglio Ordonez ChA |
| 3 | 36th | SP Mike Mussina NYA |
| 4 | 37th | OF Bobby Abreu Phi |
| 5 | 60th | RP Keith Foulke Oak |
| 6 | 61st | SP Kerry Wood ChN |
| 7 | 84th | 1B Paul Konerko ChA |
| 8 | 85th | C Jason Kendall Pit |
| 9 | 108th | 3B Adrian Beltre LA |
| 10 | 109th | SP Randy Wolf Phi |
| 11 | 132nd | SP Andy Pettitte NYA |
| 12 | 133rd | DH Josh Phelps Tor |
| 13 | 156th | 1B John Olerud Sea |
| 14 | 157th | RP Matt Mantei Ari |
| 15 | 180th | OF Trot Nixon Bos |
| 16 | 181st | SP Woody Williams StL |
| 17 | 204th | OF Juan Encarnacion Fla |
| 18 | 205th | SP Rick Reed Min |
| 19 | 228th | OF Craig Biggio Hou |
| 20 | 229th | 2B Adam Kennedy Ana |
| 21 | 252nd | OF Jay Gibbons Bal |
| 22 | 253rd | SP Oliver Perez SD |
| 23 | 276th | SP Brett Tomko StL |
| 24 | 277th | 2B Ron Belliard Col |
| 25 | 300th | 3B Hank Blalock Tex |
| 26 | 301st | SP Jose Contreras NYA |
| 27 | 324th | 1B Jeff Liefer TB |
| 28 | 325th | 2B D'Angelo Jimenez Cin |
| 29 | 348th | C Bobby Estalella Col |