| Round | Overall | Player |
|---|---|---|
| 1 | 4th | OF Barry Bonds SF |
| 2 | 21st | 1B Jim Thome Phi |
| 3 | 28th | OF Shawn Green LA |
| 4 | 45th | RP Mariano Rivera NYA |
| 5 | 52nd | SP Matt Morris StL |
| 6 | 69th | OF Larry Walker Col |
| 7 | 76th | SP Tom Glavine NYN |
| 8 | 93rd | SS Jimmy Rollins Phi |
| 9 | 100th | OF Jim Edmonds StL |
| 10 | 117th | SP Roger Clemens NYA |
| 11 | 124th | SP Mike Hampton Atl |
| 12 | 141st | RP Jose Jimenez Col |
| 13 | 148th | DH Edgar Martinez Sea |
| 14 | 165th | SP Chan Ho Park Tex |
| 15 | 172nd | SS Orlando Cabrera Mon |
| 16 | 189th | SP Rodrigo Lopez Bal |
| 17 | 196th | SP Jason Jennings Col |
| 18 | 213th | C Benito Santiago SF |
| 19 | 220th | RP Anthony Alford ChN |
| 20 | 237th | 2B Placido Polanco Phi |
| 21 | 244th | 1B Robert Fick Atl |
| 22 | 261st | 3B Jeff Cirillo Sea |
| 23 | 268th | OF Geoff Jenkins Mil |
| 24 | 285th | SP John Thomson Tex |
| 25 | 292nd | OF Michael Cuddyer Min |
| 26 | 309th | C Ramon Hernandez Oak |
| 27 | 316th | 3B Geoff Blum Hou |
| 28 | 333rd | OF Marlon Byrd Phi |
| 29 | 340th | 2B Carlos Febles KC |