| Round | Overall | Player |
|---|---|---|
| 1 | 7th | 1B Jason Giambi NYA |
| 2 | 18th | SS Derek Jeter NYA |
| 3 | 31st | SP Mark Mulder Oak |
| 4 | 42nd | C Jorge Posada NYA |
| 5 | 55th | RP Keith Foulke Oak |
| 6 | 66th | OF Gary Sheffield Atl |
| 7 | 79th | 2B Roberto Alomar ChA |
| 8 | 90th | OF Cliff Floyd NYN |
| 9 | 103rd | 3B Aramis Ramirez ChN |
| 10 | 114th | OF Hideki Matsui NYA |
| 11 | 127th | SP Al Leiter NYN |
| 12 | 138th | RP Danys Baez Cle |
| 13 | 151st | SP David Wells NYA |
| 14 | 162nd | SP Kirk Rueter SF |
| 15 | 175th | OF J.D. Drew StL |
| 16 | 186th | SP Tomo Ohka Mon |
| 17 | 199th | SP Ted Lilly Oak |
| 18 | 210th | 3B Robin Ventura LA |
| 19 | 223rd | SP Kenny Rogers Min |
| 20 | 234th | OF Steve Finley Ari |
| 21 | 247th | 1B Steve Cox TB |
| 22 | 258th | C Jason LaRue Cin |
| 23 | 271st | SS Carlos Guillen Sea |
| 24 | 282nd | RP Vladimir Nunez Fla |
| 25 | 295th | DH Brad Fullmer Ana |
| 26 | 306th | 2B Jerry Hairston Jr. Bal |
| 27 | 319th | SP Jason Simontacchi StL |
| 28 | 330th | SP John Burkett Bos |
| 29 | 343rd | SP Mike Koplove Ari |