| Round | Overall | Player |
|---|---|---|
| 1 | 5th | OF Sammy Sosa ChN |
| 2 | 20th | OF Brian S. Giles Pit |
| 3 | 29th | 3B Troy Glaus Ana |
| 4 | 44th | 1B Rafael Palmeiro Tex |
| 5 | 53rd | SP Derek Lowe Bos |
| 6 | 68th | SP Wade Miller Hou |
| 7 | 77th | OF Adam Dunn Cin |
| 8 | 92nd | SP Joel Pineiro Sea |
| 9 | 101st | SS Rich Aurilia SF |
| 10 | 116th | C Jason Kendall Pit |
| 11 | 125th | SP Jarrod Washburn Ana |
| 12 | 140th | SP Brad Radke Min |
| 13 | 149th | SP Jamie Moyer Sea |
| 14 | 164th | SP C.C. Sabathia Cle |
| 15 | 173rd | OF Carlos Lee ChA |
| 16 | 188th | OF Raul Mondesi Ari |
| 17 | 197th | SP Kip Wells Pit |
| 18 | 212th | SP John Lackey Ana |
| 19 | 221st | 1B Tino Martinez StL |
| 20 | 236th | 2B Marcus Giles Atl |
| 21 | 245th | 3B Joe Randa KC |
| 22 | 260th | SS Alex Gonzalez ChN |
| 23 | 269th | 2B Mike Young Tex |
| 24 | 284th | OF Brian Jordan LA |
| 25 | 293rd | OF Ben Grieve TB |
| 26 | 308th | OF Bob Higginson Det |
| 27 | 317th | SP Ryan Franklin Sea |
| 28 | 332nd | SP Shane Reynolds Atl |
| 29 | 341st | C Wiklenman Gonzalez SD |