| Round | Overall | Player |
|---|---|---|
| 1 | 8th | SS Nomar Garciaparra Bos |
| 2 | 17th | OF Manny Ramirez Bos |
| 3 | 32nd | 1B Carlos Delgado Tor |
| 4 | 41st | SP Kerry Wood ChN |
| 5 | 56th | OF Andruw Jones Atl |
| 6 | 65th | SP Mark Prior ChN |
| 7 | 80th | RP Jose Mesa Phi |
| 8 | 89th | 3B Eric Hinske Tor |
| 9 | 104th | OF Johnny Damon Bos |
| 10 | 113th | RP Kelvim Escobar Tor |
| 11 | 128th | 2B Luis Castillo Fla |
| 12 | 137th | 1B John Olerud Sea |
| 13 | 152nd | SP Tony Armas Jr. Mon |
| 14 | 161st | OF Brad Wilkerson Mon |
| 15 | 176th | SP Brad Penny Fla |
| 16 | 185th | C A.J. Pierzynski Min |
| 17 | 200th | SP Ben Sheets Mil |
| 18 | 209th | SP Kyle Lohse Min |
| 19 | 224th | SS Tony Womack ChN |
| 20 | 233rd | OF Corey Patterson ChN |
| 21 | 248th | SP Runelvys Hernandez KC |
| 22 | 257th | 2B Fernando Vina StL |
| 23 | 272nd | 3B Fernando Tatis Mon |
| 24 | 281st | RP Brandon Villafuerte SD |
| 25 | 296th | C Victor Martinez Cle |
| 26 | 305th | SP Joe Kennedy TB |
| 27 | 320th | RP Octavio Dotel Hou |
| 28 | 329th | C Geronimo Gil Bal |
| 29 | 344th | SP Jeff Suppan Bos |