| Round | Overall | Player |
|---|---|---|
| 1 | 6th | SS Miguel Tejada Oak |
| 2 | 19th | OF Magglio Ordonez ChA |
| 3 | 30th | 3B Scott Rolen StL |
| 4 | 43rd | RP John Smoltz Atl |
| 5 | 54th | RP Billy Wagner Hou |
| 6 | 67th | OF Garret Anderson Ana |
| 7 | 78th | SP Jason Schmidt SF |
| 8 | 91st | 1B Richie Sexson Mil |
| 9 | 102nd | 2B Todd Walker Bos |
| 10 | 115th | SP Randy Wolf Phi |
| 11 | 126th | SP Jeff Weaver NYA |
| 12 | 139th | OF Shannon Stewart Min |
| 13 | 150th | DH Erubiel Durazo Oak |
| 14 | 163rd | SP Orlando Hernandez Mon |
| 15 | 174th | OF Moises Alou ChN |
| 16 | 187th | C Toby Hall TB |
| 17 | 198th | RP Tim Spooneybarger Fla |
| 18 | 211th | SP Danny Graves Cin |
| 19 | 222nd | 3B Sean Burroughs SD |
| 20 | 235th | OF Carl Everett ChA |
| 21 | 246th | 2B D'Angelo Jimenez Cin |
| 22 | 259th | RP Matt Anderson Det |
| 23 | 270th | 1B Jeff Conine Bal |
| 24 | 283rd | SS Desi Relaford KC |
| 25 | 294th | C Brandon Inge Det |
| 26 | 307th | RP Cliff Politte Tor |
| 27 | 318th | OF Rondell White SD |
| 28 | 331st | SP Ryan Jensen SF |
| 29 | 342nd | RP Mike Timlin Bos |