| Round | Overall | Player |
|---|---|---|
| 1 | 9th | SP Curt Schilling Ari |
| 2 | 16th | C Mike Piazza NYN |
| 3 | 33rd | SP Bartolo Colon ChA |
| 4 | 40th | SP Tim Hudson Oak |
| 5 | 57th | SP Kevin Millwood Phi |
| 6 | 64th | SP Greg Maddux Atl |
| 7 | 81st | 2B Bret Boone Sea |
| 8 | 88th | SP Freddy Garcia Sea |
| 9 | 105th | SS Omar Vizquel Cle |
| 10 | 112th | SP Andy Pettitte NYA |
| 11 | 129th | OF Raul Ibanez KC |
| 12 | 136th | 3B Shea Hillenbrand Ari |
| 13 | 153rd | OF Jermaine Dye Oak |
| 14 | 160th | 1B Scott Spiezio Ana |
| 15 | 177th | OF Randy Winn Sea |
| 16 | 184th | SP Brian Lawrence SD |
| 17 | 201st | SP Kevin Appier KC |
| 18 | 208th | OF Trot Nixon Bos |
| 19 | 225th | 1B Randall Simon ChN |
| 20 | 232nd | OF Richard Hidalgo Hou |
| 21 | 249th | OF Terrence Long Oak |
| 22 | 256th | SP Josh Fogg Pit |
| 23 | 273rd | 2B Pokey Reese Pit |
| 24 | 280th | C Damian Miller ChN |
| 25 | 297th | SP Kirk Saarloos Hou |
| 26 | 304th | SS Juan Uribe Col |
| 27 | 321st | 3B Vinny Castilla Atl |
| 28 | 328th | OF Matt Lawton Cle |
| 29 | 345th | OF Roger Cedeno NYN |