| Round | Overall | Player |
|---|---|---|
| 1 | 7th | OF Sammy Sosa ChN |
| 2 | 18th | 2B Jeff Kent Hou |
| 3 | 31st | SP Roy Oswalt Hou |
| 4 | 42nd | C Mike Piazza NYN |
| 5 | 55th | SP Greg Maddux Atl |
| 6 | 66th | OF Andruw Jones Atl |
| 7 | 79th | OF Larry Walker Col |
| 8 | 90th | OF Garret Anderson Ana |
| 9 | 103rd | 3B Corey Koskie Min |
| 10 | 114th | 1B Ryan Klesko SD |
| 11 | 127th | RP Danys Baez Cle |
| 12 | 138th | SP C.C. Sabathia Cle |
| 13 | 151st | SP Brian Lawrence SD |
| 14 | 162nd | SS Orlando Cabrera Mon |
| 15 | 175th | SP Kris Benson Pit |
| 16 | 186th | 1B Mo Vaughn NYN |
| 17 | 199th | RP Alan Embree Bos |
| 18 | 210th | SP Brad Penny Fla |
| 19 | 223rd | 3B Sean Burroughs SD |
| 20 | 234th | OF Rocco Baldelli TB |
| 21 | 247th | C Victor Martinez Cle |
| 22 | 258th | OF Trot Nixon Bos |
| 23 | 271st | 2B Joe Thurston LA |
| 24 | 282nd | SP Joe Kennedy TB |
| 25 | 295th | 1B Tino Martinez StL |
| 26 | 306th | SS Ramon Santiago Det |
| 27 | 319th | C Josh Bard Cle |
| 28 | 330th | RP Francisco Rodriguez Ana |
| 29 | 343rd | SP Jeff Suppan Bos |