| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | 2B Alfonso Soriano NYA |
| 2 | 23rd | RP Eric Gagne LA |
| 3 | 26th | OF Pat Burrell Phi |
| 4 | 47th | SP Roy Halladay Tor |
| 5 | 50th | OF Chipper Jones Atl |
| 6 | 71st | 1B Derrek Lee Fla |
| 7 | 74th | RP Jose Mesa Phi |
| 8 | 95th | 3B Mike Lowell Fla |
| 9 | 98th | SP Jason Schmidt SF |
| 10 | 119th | SS David Eckstein Ana |
| 11 | 122nd | SP Jeff Weaver NYA |
| 12 | 143rd | OF Raul Ibanez KC |
| 13 | 146th | C Jason Varitek Bos |
| 14 | 167th | 1B John Olerud Sea |
| 15 | 170th | SP Brett Tomko StL |
| 16 | 191st | OF Mike Cameron Sea |
| 17 | 194th | 3B Shea Hillenbrand Ari |
| 18 | 215th | SP Kyle Lohse Min |
| 19 | 218th | SS Chris Woodward Tor |
| 20 | 239th | OF Jay Gibbons Bal |
| 21 | 242nd | SP Ryan Jensen SF |
| 22 | 263rd | 2B Placido Polanco Phi |
| 23 | 266th | C Damian Miller ChN |
| 24 | 287th | OF Brian Jordan LA |
| 25 | 290th | SP Esteban Loaiza ChA |
| 26 | 311th | SP John Burkett Bos |
| 27 | 314th | OF Jay Payton Col |
| 28 | 335th | SP Ryan Franklin Sea |
| 29 | 338th | RP Jesus Colome TB |