| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | SP Randy Johnson Ari |
| 2 | 22nd | SP Tim Hudson Oak |
| 3 | 27th | RP John Smoltz Atl |
| 4 | 46th | SP Mark Buehrle ChA |
| 5 | 51st | RP Troy Percival Ana |
| 6 | 70th | OF Bernie Williams NYA |
| 7 | 75th | 2B Roberto Alomar ChA |
| 8 | 94th | 3B Edgardo Alfonzo SF |
| 9 | 99th | OF Luis Gonzalez Ari |
| 10 | 118th | OF Juan Gonzalez Tex |
| 11 | 123rd | C Jason Kendall Pit |
| 12 | 142nd | DH Frank Thomas ChA |
| 13 | 147th | SS Edgar Renteria StL |
| 14 | 166th | SP Mike Hampton Atl |
| 15 | 171st | RP Matt Mantei Ari |
| 16 | 190th | OF Jermaine Dye Oak |
| 17 | 195th | 1B Sean Casey Cin |
| 18 | 214th | DH Edgar Martinez Sea |
| 19 | 219th | OF Richard Hidalgo Hou |
| 20 | 238th | SP Darren Dreifort LA |
| 21 | 243rd | SS Jose Reyes NYN |
| 22 | 262nd | 3B Fernando Tatis Mon |
| 23 | 267th | 1B Hee Seop Choi ChN |
| 24 | 286th | 2B Brent Butler Col |
| 25 | 291st | SS Barry Larkin Cin |
| 26 | 310th | SP Livan Hernandez Mon |
| 27 | 315th | SP Jason Marquis Atl |
| 28 | 334th | SP Carlos Zambrano ChN |
| 29 | 339th | C Geronimo Gil Bal |