| Round | Overall | Player |
|---|---|---|
| 1 | 6th | OF Manny Ramirez Bos |
| 2 | 19th | 1B Jim Thome Phi |
| 3 | 30th | OF Brian S. Giles Pit |
| 4 | 43rd | SP Derek Lowe Bos |
| 5 | 54th | SP Wade Miller Hou |
| 6 | 67th | 3B Mark Teixeira Tex |
| 7 | 78th | SP Randy Wolf Phi |
| 8 | 91st | 3B Aramis Ramirez ChN |
| 9 | 102nd | 2B Aaron Boone NYA |
| 10 | 115th | OF Jim Edmonds StL |
| 11 | 126th | C Toby Hall TB |
| 12 | 139th | 1B Aubrey Huff TB |
| 13 | 150th | SS Jose Valentin ChA |
| 14 | 163rd | SP Brad Radke Min |
| 15 | 174th | SP Tim Wakefield Bos |
| 16 | 187th | DH Josh Phelps Tor |
| 17 | 198th | SP Kip Wells Pit |
| 18 | 211th | SP Johan Santana Min |
| 19 | 222nd | OF Michael Cuddyer Min |
| 20 | 235th | SP Adam Eaton SD |
| 21 | 246th | 2B D'Angelo Jimenez Cin |
| 22 | 259th | SP Casey Fossum Bos |
| 23 | 270th | 1B Robert Fick Atl |
| 24 | 283rd | RP Braden Looper Fla |
| 25 | 294th | SS Felipe Lopez Cin |
| 26 | 307th | 2B Marcus Giles Atl |
| 27 | 318th | RP Franklyn German Det |
| 28 | 331st | OF Kevin Mench Tex |
| 29 | 342nd | C Brian Schneider Mon |