| Round | Overall | Player |
|---|---|---|
| 1 | 7th | OF Vladimir Guerrero Ana |
| 2 | 18th | OF Magglio Ordonez ChA |
| 3 | 31st | SP Tim Hudson Oak |
| 4 | 42nd | C Javy Lopez Bal |
| 5 | 55th | SP Mark Mulder Oak |
| 6 | 66th | 1B David Ortiz Bos |
| 7 | 79th | SP Jason Schmidt SF |
| 8 | 90th | OF Ken Griffey Jr Cin |
| 9 | 103rd | RP Matt Mantei Ari |
| 10 | 114th | 3B Corey Koskie Min |
| 11 | 127th | 2B Todd Walker ChN |
| 12 | 138th | SP Sidney Ponson Bal |
| 13 | 151st | OF Johnny Damon Bos |
| 14 | 162nd | SP Al Leiter NYN |
| 15 | 175th | SS Carlos Guillen Det |
| 16 | 186th | OF Reggie Sanders StL |
| 17 | 199th | SP Brian Lawrence SD |
| 18 | 210th | 1B Jeff Conine Fla |
| 19 | 223rd | 1B Shea Hillenbrand Ari |
| 20 | 234th | C Toby Hall TB |
| 21 | 247th | SP Steve Trachsel NYN |
| 22 | 258th | SS Freddy Sanchez Pit |
| 23 | 271st | OF Raul Mondesi Ana |
| 24 | 282nd | OF Jerry Hairston Jr. Bal |
| 25 | 295th | SP Victor Zambrano NYN |
| 26 | 306th | 1B Tino Martinez TB |
| 27 | 319th | OF Larry Bigbie Bal |
| 28 | 330th | SP Jason Johnson Det |
| 29 | 343rd | SP Damian Moss TB |