| Round | Overall | Player |
|---|---|---|
| 1 | 10th | SS Nomar Garciaparra ChN |
| 2 | 15th | 1B Jason Giambi NYA |
| 3 | 34th | SP Kevin Brown NYA |
| 4 | 39th | RP Mariano Rivera NYA |
| 5 | 58th | 3B Hank Blalock Tex |
| 6 | 63rd | 1B Mike Sweeney KC |
| 7 | 82nd | OF Garret Anderson Ana |
| 8 | 87th | OF Larry Walker StL |
| 9 | 106th | RP Trevor Hoffman SD |
| 10 | 111th | C Mike Lieberthal Phi |
| 11 | 130th | SP Roger Clemens Hou |
| 12 | 135th | SP Livan Hernandez Mon |
| 13 | 154th | OF Torii Hunter Min |
| 14 | 159th | RP Robb Nen SF |
| 15 | 178th | C Charles Johnson Col |
| 16 | 183rd | SP David Wells SD |
| 17 | 202nd | SP Carl Pavano Fla |
| 18 | 207th | 2B Junior Spivey Mil |
| 19 | 226th | DH Edgar Martinez Sea |
| 20 | 231st | OF Jody Gerut Cle |
| 21 | 250th | OF Kenny Lofton NYA |
| 22 | 255th | 2B Brian Roberts Bal |
| 23 | 274th | RP Mike MacDougal KC |
| 24 | 279th | SP Brett Tomko SF |
| 25 | 298th | 3B Eric Munson Det |
| 26 | 303rd | 1B Robert Fick TB |
| 27 | 322nd | 2B Fernando Vina Det |
| 28 | 327th | SP Kenny Rogers Tex |
| 29 | 346th | OF Jason Bay Pit |