| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | 2B Alfonso Soriano Tex |
| 2 | 23rd | 3B Scott Rolen StL |
| 3 | 26th | C Jorge Posada NYA |
| 4 | 47th | SP Mike Mussina NYA |
| 5 | 50th | SP Roy Oswalt Hou |
| 6 | 71st | SP Josh Beckett Fla |
| 7 | 74th | OF Austin Kearns Cin |
| 8 | 95th | SS Angel Berroa KC |
| 9 | 98th | OF Adam Dunn Cin |
| 10 | 119th | 1B Nick Johnson Mon |
| 11 | 122nd | OF Hideki Matsui NYA |
| 12 | 143rd | SP Brad Penny LA |
| 13 | 146th | OF Brad Wilkerson Mon |
| 14 | 167th | SP Matt Clement ChN |
| 15 | 170th | 1B Josh Phelps Cle |
| 16 | 191st | C Paul Lo Duca Fla |
| 17 | 194th | OF Carl Everett ChA |
| 18 | 215th | SP John Thomson Atl |
| 19 | 218th | 3B Tony Batista Mon |
| 20 | 239th | SS Khalil Greene SD |
| 21 | 242nd | SP Miguel Batista Tor |
| 22 | 263rd | SP Jeff Weaver LA |
| 23 | 266th | RP Matt Herges SF |
| 24 | 287th | OF Laynce Nix Tex |
| 25 | 290th | RP Justin Speier Tor |
| 26 | 311th | 2B Mark DeRosa Atl |
| 27 | 314th | RP Curt Leskanic Bos |
| 28 | 335th | OF Michael Cuddyer Min |
| 29 | 338th | SP Grant Balfour Min |