| Round | Overall | Player |
|---|---|---|
| 1 | 9th | OF Sammy Sosa ChN |
| 2 | 16th | OF Carlos Beltran Hou |
| 3 | 33rd | SP Curt Schilling Bos |
| 4 | 40th | RP Keith Foulke Bos |
| 5 | 57th | 1B Rafael Palmeiro Bal |
| 6 | 64th | RP Octavio Dotel Oak |
| 7 | 81st | 1B Frank Thomas ChA |
| 8 | 88th | SP Greg Maddux ChN |
| 9 | 105th | OF Juan Gonzalez KC |
| 10 | 112th | RP Joe Borowski ChN |
| 11 | 129th | SP Derek Lowe Bos |
| 12 | 136th | 1B Eric Hinske Tor |
| 13 | 153rd | 2B Ray Durham SF |
| 14 | 160th | 3B Jose Valentin ChA |
| 15 | 177th | SP Jarrod Washburn Ana |
| 16 | 184th | OF Shannon Stewart Min |
| 17 | 201st | SP Woody Williams StL |
| 18 | 208th | SP Tom Glavine NYN |
| 19 | 225th | RP David Riske Cle |
| 20 | 232nd | 1B Jason Phillips NYN |
| 21 | 249th | C Victor Martinez Cle |
| 22 | 256th | C Benito Santiago KC |
| 23 | 273rd | OF Tim Salmon Ana |
| 24 | 280th | SS Omar Vizquel Cle |
| 25 | 297th | SP Darrell May KC |
| 26 | 304th | 3B Ty Wigginton Pit |
| 27 | 321st | SP Jon Garland ChA |
| 28 | 328th | 2B Mark Grudzielanek ChN |
| 29 | 345th | DH Ellis Burks Bos |