| Round | Overall | Player |
|---|---|---|
| 1 | 3rd |
2B
Alfonso Soriano
|
| 2 | 22nd |
OF
Gary Sheffield
|
| 3 | 27th |
RP
Billy Wagner
|
| 4 | 46th |
SP
Mike Mussina
|
| 5 | 51st |
OF
Lance Berkman
|
| 6 | 70th |
RP
Jason Isringhausen
|
| 7 | 75th |
3B
Morgan Ensberg
|
| 8 | 94th |
C
Jason Varitek
|
| 9 | 99th |
RP
Trevor Hoffman
|
| 10 | 118th | RP Armando Benitez |
| 11 | 123rd |
1B
Kevin Millar
|
| 12 | 142nd |
SS
Angel Berroa
|
| 13 | 147th |
OF
Larry Walker
|
| 14 | 166th |
1B
Jay Gibbons
|
| 15 | 171st |
SP
Brett Myers
|
| 16 | 190th |
SP
Byung-Hyun Kim
|
| 17 | 195th |
1B
Brad Fullmer
|
| 18 | 214th |
SP
John Thomson
|
| 19 | 219th | 3B Adrian Beltre |
| 20 | 238th |
SP
Tomo Ohka
|
| 21 | 243rd | OF Raul Mondesi |
| 22 | 262nd |
RP
Joe Nathan
|
| 23 | 267th |
1B
Jason Phillips
|
| 24 | 286th | SP Kazuhisa Ishii |
| 25 | 291st | OF Tim Salmon |
| 26 | 310th |
SS
Royce Clayton
|
| 27 | 315th |
SP
Ryan Wagner
|
| 28 | 334th |
C
Robby Hammock
|
| 29 | 339th |
2B
Mark Grudzielanek
|