| Round | Overall | Player |
|---|---|---|
| 1 | 12th |
OF
Carlos Beltran
|
| 2 | 13th |
SP
Mark Prior
|
| 3 | 36th |
3B
Hank Blalock
|
| 4 | 37th |
C
Javy Lopez
|
| 5 | 60th | RP Troy Percival |
| 6 | 61st |
1B
Mark Teixeira
|
| 7 | 84th |
SP
Carlos Zambrano
|
| 8 | 85th |
SS
Mike Young
|
| 9 | 108th |
OF
Carl Everett
|
| 10 | 109th |
SP
Roger Clemens
|
| 11 | 132nd |
SP
Gil Meche
|
| 12 | 133rd |
OF
Geoff Jenkins
|
| 13 | 156th |
OF
Bernie Williams
|
| 14 | 157th |
SP
Kyle Lohse
|
| 15 | 180th |
1B
Erubiel Durazo
|
| 16 | 181st |
OF
Ryan Klesko
|
| 17 | 204th |
2B
Todd Walker
|
| 18 | 205th |
3B
Joe Randa
|
| 19 | 228th | SP Jeff Weaver |
| 20 | 229th |
SP
Jeremy Affeldt
|
| 21 | 252nd | SS Alex Gonzalez |
| 22 | 253rd |
SP
Rafael Soriano
|
| 23 | 276th |
OF
Mike Cameron
|
| 24 | 277th |
SP
Jose Valverde
|
| 25 | 300th |
C
Johnny Estrada
|
| 26 | 301st |
OF
Craig A. Wilson
|
| 27 | 324th |
SS
Jack Wilson
|
| 28 | 325th |
SP
Jimmy Haynes
|
| 29 | 348th |
SP
Jason Marquis
|