| Round | Overall | Player |
|---|---|---|
| 1 | 1st | 3B Alex Rodriguez NYA |
| 2 | 24th | RP Billy Wagner Phi |
| 3 | 25th | RP Mariano Rivera NYA |
| 4 | 48th | C Ivan Rodriguez Det |
| 5 | 49th | SP Kerry Wood ChN |
| 6 | 72nd | SS Orlando Cabrera Bos |
| 7 | 73rd | 2B Jose Vidro Mon |
| 8 | 96th | OF Pat Burrell Phi |
| 9 | 97th | SP Randy Wolf Phi |
| 10 | 120th | OF Ken Griffey Jr Cin |
| 11 | 121st | 1B Kevin Millar Bos |
| 12 | 144th | SP Jake Peavy SD |
| 13 | 145th | SP Sidney Ponson Bal |
| 14 | 168th | SP Eric Milton Phi |
| 15 | 169th | 1B Josh Phelps Cle |
| 16 | 192nd | OF Raul Ibanez Sea |
| 17 | 193rd | 1B Erubiel Durazo Oak |
| 18 | 216th | SP Tim Redding Hou |
| 19 | 217th | OF Juan Pierre Fla |
| 20 | 240th | 3B Adrian Beltre LA |
| 21 | 241st | C Charles Johnson Col |
| 22 | 264th | SP Victor Zambrano NYN |
| 23 | 265th | SP Eric DuBose Bal |
| 24 | 288th | OF Raul Mondesi Ana |
| 25 | 289th | SS Julio Lugo TB |
| 26 | 312th | RP Jose Mesa Pit |
| 27 | 313th | 2B Orlando Hudson Tor |
| 28 | 336th | OF Juan Encarnacion Fla |
| 29 | 337th | SP Jason Johnson Det |