| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | 1B Albert Pujols StL |
| 2 | 23rd | OF Carlos Beltran Hou |
| 3 | 26th | 3B Scott Rolen StL |
| 4 | 47th | OF Preston Wilson Col |
| 5 | 50th | SP Tim Hudson Oak |
| 6 | 71st | SP Roger Clemens Hou |
| 7 | 74th | OF Garret Anderson Ana |
| 8 | 95th | SP Esteban Loaiza NYA |
| 9 | 98th | SP Hideo Nomo LA |
| 10 | 119th | 2B Kazuo Matsui NYN |
| 11 | 122nd | 1B Phil Nevin SD |
| 12 | 143rd | SP Rich Harden Oak |
| 13 | 146th | C Ramon Hernandez SD |
| 14 | 167th | OF Corey Patterson ChN |
| 15 | 170th | RP Ugueth Urbina Det |
| 16 | 191st | SP Brian Lawrence SD |
| 17 | 194th | DH Edgar Martinez Sea |
| 18 | 215th | OF Scott Podsednik Mil |
| 19 | 218th | 2B Roberto Alomar ChA |
| 20 | 239th | RP Mike MacDougal KC |
| 21 | 242nd | SP Kris Benson NYN |
| 22 | 263rd | SS Alex Gonzalez Fla |
| 23 | 266th | SP Kazuhisa Ishii LA |
| 24 | 287th | OF Luis Matos Bal |
| 25 | 290th | SP Jesse Foppert SF |
| 26 | 311th | SP Pat Hentgen Tor |
| 27 | 314th | SP Jason Jennings Col |
| 28 | 335th | OF Larry Bigbie Bal |
| 29 | 338th | SP Jimmy Gobble KC |