| Round | Overall | Player |
|---|---|---|
| 1 | 5th | SS Miguel Tejada Bal |
| 2 | 20th | OF Magglio Ordonez ChA |
| 3 | 29th | 2B Bret Boone Sea |
| 4 | 44th | 1B Jeff Bagwell Hou |
| 5 | 53rd | 3B Chipper Jones Atl |
| 6 | 68th | 1B Mike Sweeney KC |
| 7 | 77th | SP Kevin Millwood Phi |
| 8 | 92nd | RP Jason Isringhausen StL |
| 9 | 101st | SP Jamie Moyer Sea |
| 10 | 116th | SP Jose Contreras ChA |
| 11 | 125th | SP Russ Ortiz Atl |
| 12 | 140th | OF Carl Crawford TB |
| 13 | 149th | SP Matt Clement ChN |
| 14 | 164th | 1B Jay Gibbons Bal |
| 15 | 173rd | RP Francisco Cordero Tex |
| 16 | 188th | C Paul Lo Duca Fla |
| 17 | 197th | OF Rocco Baldelli TB |
| 18 | 212th | 1B Shea Hillenbrand Ari |
| 19 | 221st | RP Braden Looper NYN |
| 20 | 236th | 3B Edgardo Alfonzo SF |
| 21 | 245th | SP Ted Lilly Tor |
| 22 | 260th | SP Tim Wakefield Bos |
| 23 | 269th | 1B Sean Casey Cin |
| 24 | 284th | SP Byung-Hyun Kim Bos |
| 25 | 293rd | SS Cristian Guzman Min |
| 26 | 308th | 2B Luis Rivas Min |
| 27 | 317th | C Ben Molina Ana |
| 28 | 332nd | SP Jae Weong Seo NYN |
| 29 | 341st | DH Ellis Burks Bos |