| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | 1B Todd Helton Col |
| 2 | 22nd | OF Vernon Wells Tor |
| 3 | 27th | RP Keith Foulke Bos |
| 4 | 46th | 3B Hank Blalock Tex |
| 5 | 51st | SP Mark Mulder Oak |
| 6 | 70th | SP Andy Pettitte Hou |
| 7 | 75th | SS Mike Young Tex |
| 8 | 94th | OF Ichiro Suzuki Sea |
| 9 | 99th | SP Derek Lowe Bos |
| 10 | 118th | OF Geoff Jenkins Mil |
| 11 | 123rd | SP Livan Hernandez Mon |
| 12 | 142nd | C Jason Kendall Pit |
| 13 | 147th | SP Jarrod Washburn Ana |
| 14 | 166th | SS Alex Cintron Ari |
| 15 | 171st | 1B Nick Johnson Mon |
| 16 | 190th | OF Dmitri Young Det |
| 17 | 195th | RP Robb Nen SF |
| 18 | 214th | SP Brian Anderson KC |
| 19 | 219th | 3B D'Angelo Jimenez Cin |
| 20 | 238th | C A.J. Pierzynski SF |
| 21 | 243rd | 2B Junior Spivey Mil |
| 22 | 262nd | SP John Lackey Ana |
| 23 | 267th | SP Zach Day Mon |
| 24 | 286th | RP Justin Speier Tor |
| 25 | 291st | OF Mike Cameron NYN |
| 26 | 310th | OF Darin Erstad Ana |
| 27 | 315th | RP Danys Baez TB |
| 28 | 334th | 3B Wes Helms Mil |
| 29 | 339th | SP Zack Greinke KC |