| Round | Overall | Player |
|---|---|---|
| 1 | 9th | SP Pedro Martinez Bos |
| 2 | 16th | SP Curt Schilling Bos |
| 3 | 33rd | SS Derek Jeter NYA |
| 4 | 40th | OF Bobby Abreu Phi |
| 5 | 57th | SP Mike Mussina NYA |
| 6 | 64th | 2B Marcus Giles Atl |
| 7 | 81st | OF Austin Kearns Cin |
| 8 | 88th | 3B Morgan Ensberg Hou |
| 9 | 105th | C Jason Varitek Bos |
| 10 | 112th | OF Brad Wilkerson Mon |
| 11 | 129th | OF Torii Hunter Min |
| 12 | 136th | 1B Paul Konerko ChA |
| 13 | 153rd | SP Brad Radke Min |
| 14 | 160th | RP Matt Herges SF |
| 15 | 177th | C Matthew LeCroy Min |
| 16 | 184th | OF Shannon Stewart Min |
| 17 | 201st | SP Miguel Batista Tor |
| 18 | 208th | 1B Jeff Conine Fla |
| 19 | 225th | 3B Tony Batista Mon |
| 20 | 232nd | RP Dan Kolb Mil |
| 21 | 249th | 2B Mark DeRosa Atl |
| 22 | 256th | RP Curt Leskanic Bos |
| 23 | 273rd | 1B Ben Broussard Cle |
| 24 | 280th | SS Khalil Greene SD |
| 25 | 297th | 1B Adam LaRoche Atl |
| 26 | 304th | RP Carlos Silva Min |
| 27 | 321st | OF Michael Cuddyer Min |
| 28 | 328th | 2B Ron Belliard Cle |
| 29 | 345th | SP Bronson Arroyo Bos |