| Round | Overall | Player |
|---|---|---|
| 1 | 4th | 2B Alfonso Soriano Tex |
| 2 | 21st | OF Magglio Ordonez ChA |
| 3 | 28th | OF Vernon Wells Tor |
| 4 | 45th | RP Billy Wagner Phi |
| 5 | 52nd | SP Barry Zito Oak |
| 6 | 69th | OF Shawn Green LA |
| 7 | 76th | RP Eddie Guardado Sea |
| 8 | 93rd | 1B Eric Hinske Tor |
| 9 | 100th | 1B David Ortiz Bos |
| 10 | 117th | SP Wade Miller Hou |
| 11 | 124th | OF Hideki Matsui NYA |
| 12 | 141st | SP Odalis Perez LA |
| 13 | 148th | SS Bobby Crosby Oak |
| 14 | 165th | 1B Jay Gibbons Bal |
| 15 | 172nd | SP Kip Wells Pit |
| 16 | 189th | OF Jeromy Burnitz Col |
| 17 | 196th | RP Francisco Cordero Tex |
| 18 | 213th | C Paul Lo Duca Fla |
| 19 | 220th | 3B Bill Mueller Bos |
| 20 | 237th | SP Tim Redding Hou |
| 21 | 244th | SP John Thomson Atl |
| 22 | 261st | 1B Hee Seop Choi LA |
| 23 | 268th | RP Matt Herges SF |
| 24 | 285th | SS Julio Lugo TB |
| 25 | 292nd | SP Kurt Ainsworth Bal |
| 26 | 309th | 1B Tino Martinez TB |
| 27 | 316th | 2B Mark Grudzielanek ChN |
| 28 | 333rd | C Johnny Estrada Atl |
| 29 | 340th | C Greg Myers Tor |