| Round | Overall | Player |
|---|---|---|
| 1 | 10th | OF Manny Ramirez Bos |
| 2 | 15th | 1B Jason Giambi NYA |
| 3 | 34th | RP Keith Foulke Bos |
| 4 | 39th | SP Kerry Wood ChN |
| 5 | 58th | OF Jim Edmonds StL |
| 6 | 63rd | SP Bartolo Colon Ana |
| 7 | 82nd | SP Kevin Millwood Phi |
| 8 | 87th | OF Ken Griffey Jr Cin |
| 9 | 106th | C Jason Varitek Bos |
| 10 | 111th | RP Joe Borowski ChN |
| 11 | 130th | OF Jose Guillen Ana |
| 12 | 135th | OF Corey Patterson ChN |
| 13 | 154th | SS Jimmy Rollins Phi |
| 14 | 159th | SP Brad Radke Min |
| 15 | 178th | 2B Placido Polanco Phi |
| 16 | 183rd | SS Rich Aurilia SD |
| 17 | 202nd | 1B Shea Hillenbrand Ari |
| 18 | 207th | 3B Edgardo Alfonzo SF |
| 19 | 226th | SP Kyle Lohse Min |
| 20 | 231st | OF Jacque Jones Min |
| 21 | 250th | SP Tony Armas Jr. Mon |
| 22 | 255th | 1B Sean Casey Cin |
| 23 | 274th | SP Jeff Suppan StL |
| 24 | 279th | C Michael Barrett ChN |
| 25 | 298th | 2B Luis Rivas Min |
| 26 | 303rd | SP Cory Lidle Phi |
| 27 | 322nd | RP Jose Mesa Pit |
| 28 | 327th | OF Bobby Kielty Oak |
| 29 | 346th | SP Aaron Harang Cin |